Welcome to pynoddy’s documentation!

Contents:

• pynoddy
  • What is pynoddy
  • What is Noddy?
  • Installation
  • Installation of the pynoddy package
  • Installation of Noddy
  • Using a pre-compiled version of Noddy
  • Compiling Noddy from source files (recommended installation)
  • Placing the executable noddy in the Path
  • Noddy executable and GUI for Windows
  • Testing the installation
  • Testing noddy
  • Testing pynoddy
  • How to get started
  • Tutorial Jupyter notebooks
  • The Atlas of Strutural Geophysics
  • Documentation
  • Technical Notes
  • Dependencies
  • 3-D Visualisation
  • References
• pynoddy.noddy module
• Simulation of a Noddy history and visualisation of output
  • Compute the model
  • Loading Noddy output files
  • Plotting sections through the model
  • Export model to VTK
• Change Noddy input file and recompute model
  • Get basic information on the model
  • Change model cube size and recompute model
  • Estimating computation time for a high-resolution model
  • Simple convergence study
• Geological events in pynoddy: organisation and adpatiation
  • Loading events from a Noddy history
  • Changing aspects of geological events
  • Changing the order of geological events
  • Determining the stratigraphic difference between two models
• Creating a model from scratch
  • Defining a stratigraphy
  • Add a fault event
  • Complete Model Set-up
• Read and Visualise Geophysical Potential-Fields
  • Read history file from Virtual Explorer
  • Visualise calculated geophysical fields
  • Change history and compare gravity
  • Figure with all results
• Reproducible Experiments with pynoddy
  • Defining an experiment
  • Loading an example model from the Atlas of Structural Geophysics
• Gippsland Basin Uncertainty Study
  • The Gippsland Basin Model
  • Generate randomised model realisations
  • Exporting results to VTK for visualisation
• Sensitivity Analysis
  • Theory: local sensitivity analysis
  • Defining the responses
  • Setting up the base model
  • Define parameter uncertainties
  • Calculate total stratigraphic distance
  • Function to modify parameters
  • Full sensitivity analysis
• Simulation of a Noddy history and analysis of its voxel topology
  • Compute the model
  • Loading Topology output files
• Fault shapes
• Pynoddy modules, classes and functions
  • Basic modules (low-level access)
    • Main module
    • History file parser: pynoddy.history
    • Output file parser: pynoddy.output
    • Additional useful classes
      • pynoddy.events
  • Modules for Kinematic experiments
    • Base classes for pynoddy experiments
    • MonteCarlo class
    • SensitivityAnalysis class